114 for (
int so = 0; so <= su; ++so)
116 for (
int uo = 0; uo <= so; ++uo)
118 if (su == so * (so + 1) / 2 + uo)
146 for (
int so = 0; so <= su; ++so)
148 for (
int uo = 0; uo <= so; ++uo)
150 if (su == so * (so + 1) / 2 + uo)
228 return (1 - biasU) * (
246 return (1 - biasU) * (
264 return (1 - biasT) * (
374 for (
int i = 0; i < n; ++i)
381 for (
int j = 0; j <
size; ++j)
383 superbundle.
bundle(0)[j] += weight *
_dataSS[frequencyOffset + sites[j].
rid];
384 superbundle.
bundle(1)[j] += signedWeight *
_dataDD[frequencyOffset + sites[j].rid];
577 if (sOffset >= uOffset)
return _directAccess(siteOffset, sOffset, tOffset, uOffset, symmetry);
581 else return -
_directAccess(siteOffset, uOffset, tOffset, sOffset, symmetry);
601 ASSERT(sOffset >= uOffset);
622 if (sOffset < uOffset)